The recent start-up of several full-scale ‘second generation’ ethanol plants marks a major milestone in the development of Saccharomyces cerevisiae strains for fermentation of lignocellulosic hydrolysates of agricultural residues and energy crops. After a discussion of the challenges that these novel industrial contexts impose on yeast strains, this minireview describes key metabolic engineering strategies that have been developed to address these challenges. Additionally, it outlines how proof-of-concept studies, often developed in academic settings, can be used for the development of robust strain platforms that meet the requirements for industrial application. Fermentation performance of current engineered industrial S. cerevisiae strains is no longer a bottleneck in efforts to achieve the projected outputs of the first large-scale second-generation ethanol plants. Academic and industrial yeast research will continue to strengthen the economic value position of second-generation ethanol production by further improving fermentation kinetics, product yield and cellular robustness under process conditions.@en

Our study aims to enhance process understanding of the long-term (decadal and longer) cyclic marsh dynamics by identifying the mechanisms that translate large-scale physical forcing in the system into vegetation change, in particular (i) the initiation of lateral erosion on an expanding marsh, and (ii) the control of seedling establishment in front of an eroding marsh-cliff. Short-term sediment dynamics (i.e., seasonal and shorter changes in sediment elevation) at the mudflat causes variation in mudflat elevation over time (δzTF). The resulting difference in elevation between the tidal flat and adjacent marsh (ΔZ) initiates lateral marsh erosion. Marsh erosion rate was found to depend on sediment type and to increase with increasing ΔZ and hydrodynamic exposure. Laboratory and field experiments revealed that seedling establishment was negatively impacted by an increasing δzTF. As the amplitude of δzTF increases towards the channel, expanding marshes become more prone to lateral erosion the further they extend on a tidal flat, and the chance for seedlings to establish increases with the distance that marsh has eroded back towards the land. This process-based understanding, showing the role of sediment dynamics as explanatory factor for marsh cyclicity, is important for protecting and restoring valuable marsh ecosystems. Overall, our experiments emphasize the need for understanding the connections between neighbouring ecosystems such as mudflat and salt marsh.@en

Successful management and restoration of coastal vegetation requires a quantitative process-based understanding of thresholds hampering (re-)establishment of pioneer vegetation. We expected scouring to be important in explaining the disappearance of seedlings and/or small propagules of intertidal plant species, and therefore quantified the dependence of scouring on plant traits (flexibility, size) and physical forcing by current velocity. Flume studies with unidirectional flow revealed that scouring around seedlings increased exponentially with current velocity and according to a power relationship with plant size. Basal stem diameter rather than shoot length controlled scouring volume. Flexible shoots caused far less scouring than stiff shoots, provided that the bending occurred near the sediment surface as was the case for Zostera, and not on top of a solid tussock base as we observed for Puccinellia. Therefore, shoot stiffness is likely to strongly affect the chances for initial establishment in hydrodynamically exposed areas. Plant traits such as shoot stiffness are subject to a trade-off between advantages and disadvantages, the outcome of which depends on the physical settings.@en